PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636813.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 844aa    MW: 92998.6 Da    PI: 6.5088
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.7e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++ + +l  +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  XP_013636813.1 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELLARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--RNEK 217
                     99***********************9*****97777664.9************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_013636813.1 218 NQLFLGIRRA 227
                     8899999986 PP

2Auxin_resp1094.8e-36252335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha +t+s F+v+++Pras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  XP_013636813.1 252 AAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWSNSHWRSVK 335
                     799******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-47112255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-39119241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-20125221No hitNo description
SMARTSM010198.9E-23126228IPR003340B3 DNA binding domain
PfamPF023626.9E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97126228IPR003340B3 DNA binding domain
PfamPF065072.3E-31252335IPR010525Auxin response factor
SuperFamilySSF542773.53E-7734812No hitNo description
PfamPF023098.3E-8735823IPR033389AUX/IAA domain
PROSITE profilePS5174523.082738822IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV  60
DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK  120
QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRAIRP QTIVPSSVLS  240
SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML  300
FETEESSVRR YMGTITGISD LDSVRWSNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSLFPL RLKRPWHAGT SSLHGIHPPF VSSPKLLVAI NLNHCGVTDG RGELGSGLPW  420
LRGGGGGEQQ GLLPLNYPSV GLFPWMQQRL DLAQLGTDNN QQYQAMLAAG LQNMGGGDPL  480
RQQFVQLQEP PPSHHQYLQQ SASHNSDLML QQQQQHHLMH AQTQIMCENL PQRQEVSKQQ  540
PAGGGGQQSV DQNAYLNALK MQNGQLQQWQ QHSDMPSPSS FMKADFTDKF ATTASPIQQN  600
SASPGSGHGS NLLNFSITGQ SALPEQLIGE GWSPKASNTF SEPLSLPPQA YAGKSLALEP  660
ASANVNPSVF GVDPGSGLFL PSTVPRFASS SSGGDVEAYP MSLADSGFEN SLYNSCMQDT  720
THELLHGVGQ INPSNQTKNF VKVYKSGSVG RSLDISRFSS YHELREELGK MFAIEGLLED  780
PLRSGWQLVF VDKENDILLL GDDPWESFVS NVWYIKILSP EDVQEMGDHG EGSGGSLPQN  840
PTHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-152835640388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794720.0JN979472.1 Brassica rapa subsp. pekinensis auxin response factor 8-2 (ARF8-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636813.10.0PREDICTED: auxin response factor 8 isoform X1
RefseqXP_013731921.10.0PREDICTED: auxin response factor 8-like isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLH9B4D30.0H9B4D3_BRARP; Auxin response factor
STRINGBra028110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8